The microbiome - your inner oncologist

17 Jun 2016
The microbiome - your inner oncologist

by ecancer Medical Reporter Will Davies

Unfortunate news for any readers going through an identity crisis: You are mostly not human.


Within you, across just about every tissue type that makes up your body, you play host to an empire of microbes who have long since colonised and conquered your skin, teeth, intestines, and everything else they can reach.

This is your microbiome, a term coined by Joshua Lederberg in 2001 to describe “the ecological community of commensal, symbiotic, and pathogenic microorganisms that literally share our body space”1 .

On a cellular level, your microbiome outnumbers human tissue easily, with the gut microbiota alone comprising of 100 trillion cells, from up to 1000 different species2, which vary further from person to person3 with 100 times as many genes as the human genome4.

This is to say nothing of the varied oral, nasal and skin flora.

Many of these colonists are gifted to us during birth.

Some researchers are concerned that caesarean delivery limits a child’s inner biodiversity5, and medical models of mice denied microbiota during conception and birth have also shown unresponsiveness to autoimmune conditions such as MS and arthritis6.

These populations perform symbiotic roles with their new host, aiding digestion, tissue development and shuttering out more harmful pathogens.

While it may be discomfiting to think of birth as conferring bacteria to a vulnerable infant, those same microbes are essential to the healthy development, with some describing a ‘critical window’7 in early life during which microbiota fluctuate8, and may favour the development of diseases and conditions ranging from asthma and irritable bowel syndrome to depression, autism, and cancer9.

Under normal conditions, there exists a quiet stalemate of microbiota and immune response, with commensal bacteria carefully directing inflammatory response and tissue damage away from their niche and towards foreign pathogens or uncontrolled growth of the commensal cohort.

This truce is mediated by secretions and cell surface signalling, often via toll-like receptors which deactivate local immune recruitment10.

TLRs account for a significant portion of immune pattern recognition receptors (PRRs), which activate dendritic cells to attract the appropriate immune response.

Different sites rely on different messenger molecules; short-chain fatty acids (SCFAs) binding to GPCRs to regulate interleukin expression and suppress inflammation in the gut, for example11, or Leishmania major-associated IL-1 production in the skin directs regulatory T Cells12.

While this regulation is key to homeostasis between the microbiome and host immunity, any imbalance in the system, or dysbiosis, provides opportunistic infections a chance to capitalise on a preoccupied immune response and a diminished microbiome, lending additional risk to the use of broad-spectrum antibiotics13.

Often this manifests in the gut, site of a significant portion of one's microbiota, as Crohns, colitis, and other inflammatory bowel diseases14.

Inflammation, being the hallmark of infection, is a body’s way of creating the least-favourable environment in which a foreign microbe might propagate15.

It is also, unfortunately, the environment in which tumour cells thrive.

Here is where the tangled web of immunity, microbiota, and tumourigenesis surfaces; how can one be challenged without exploitation by another?

A whole interleukin-mediated inflammasome exists for the purpose of denying a pathogenic foothold16, with knockout mice being especially at risk of colorectal cancers.

A fascinating extension of this knockout susceptibility is that it can be conferred to healthy mice using faecal transfer, rather than their full complement of microbiota giving any resistance17,18, yet germ-free mice lacking in IL-10 expression were found unaffected by known carcinogen azoxymethane19 .

There are numerous infections known to result in cancer, and even displacement of naturally occurring microbes between organs is enough to facilitate precancerous lesions20

Famous among tumourigenic pathogens are human papillomavirus, Helicobacter pylori, and Epstein-Barr virus, though countless others may promote dysbioses resulting in cancer.

This may be through either viral corruption of host cell cycles, direct bacterial damage to host organs, or disruption to host microbiota.

Acid production by invasive Clostridium and Bacteroides species in the gut results in DNA damage and stimulates cell proliferation to heal perceived wounding, strengthening the tumour microenvironment21.

Certain strains of E. coli are also associated with colorectal cancer, and dysbioses resulting from patient obesity has been causally linked to hepatocarcinoma22.

A straight line can be drawn from a diet rich in red meat to Fusobacterium nucleatum, to inflammation, DNA damage and immune evasion23.

Disease states due to dysbioses aren’t limited to their surrounding tissues, and some effects can be distal, with gut dysbiosis reported to influence development of neuropathy24.

Beyond the direct causal link to cancer, one’s microbiological population also influences response to treatment, with higher Lactobacillus presence negatively affecting CpG-ODN efficacy, and platinum compounds becoming suddenly ineffective in germ-free mice25.

Dysbioses that prevent proper immune direction hamper immunotherapy, naturally, and cyclophosphamide chemotherapy is similarly neutered26.

As the removal of microflora affects the efficacy of anti-tumoural drugs, the timing of radiotherapy must be considered.

While whole-body radiation does improve patient response to T cell transfer in adoptive cell therapy27, tumour shrinkage by radiation was reduced following antibiotic treatment, as was oxaliplatin response in mouse models25.

So far, the primary dysbioses discussed have been short term, an antibiotic course or radiotherapy fraction.

However, changes in microbiota can be charted across generations and continents, with the increased prevalence of western diets in China resulting in an increasing trend of colorectal cancer28, and though limiting H. pylori infection has reduced gastric cancers, its absence may also be associated with an increase in oesophageal cancer29 .

Just as balance is essential in maintaining one’s microbiome, it is important to recognise that your microflora are not merely carcinogens in waiting.

Many are capable, if not essential, to promote recovery and efficacy of cancer therapies.

After all, whilst it is a new development for clinicians, your microbiome has been manipulating immune responses for quite some time, and seems to be essential in managing these upstart human interventions30.

Amongst the multitude microbiota, your gut is home to butyrate-producing bacteria, which feast upon dietary fiber.

Butyrate itself is a histone deacetylase inhibitor, assuring DNA goes undamaged, and activates genes which promote apoptosis and slow cell cycle progression, making it a potent tumour suppressor23.

Butyrate enemas also relieve inflammation for sufferers of colitis, Crohns, and IBD, who are at significant risk of inflammation-associated colorectal cancer31.

Equol, a bacterial metabolite of daidzein from soy products, has been linked to reduced risk of breast cancer and prostate cancer in Asian men and women32.

Probiotics and prebiotic supplements aid in restoring internal equilibrium following microbial suppression.

As a patient's microbiome recovers, so cancer growth slows33 and can even begin to regress34.

The anti-oxidant activity associated with many prebiotics prevents inflammatory pathways from activating unduly, and can prevent damage to DNA that may later result in cancer35.

Specifically engineered strains of bacteria can further limit inflammation and increase anti-oxidant expression to reduce tissue damage36, even in mice lacking in IL-10.

Faecal transplant of healthy microbiota is proving effective in restoring patient responses37, and can even be combined with PD-1 checkpoint therapy38 with the potential to reshape patient-centric therapy in cancer and beyond.

This is all, of course, only the briefest of introductions to a field in its infancy; microbiota are changing our understanding of infectious disease, autoimmunity, and mental health39.

A major struggle in cancer therapy is how to separate healthy from cancerous cells when they are so very nearly self40.

In treating our human self we may yet reach a better appreciation of our non-human selves too.


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